38 titles- Polyphony 1 (Wilsonville, Oregon: Wheatland Press, 2002) with Deborah Layne [anth: Polyphony: pb/John Elliott]
- Greetings from Lake Wu (Wilsonville, Oregon: Wheatland Press, 2003) [coll: pb/Frank Wu]
- Polyphony 2 (Wilsonville, Oregon: Wheatland Press, 2003) with Deborah Layne [anth: Polyphony: pb/]
- Green Grow the Rushes-Oh (Auburn, Washington: Fairwood Press, 2003) [coll: chap: pb/Keith Boulger]
- Polyphony 3 (Wilsonville, Oregon: Wheatland Press, 2003) with Deborah Layne [anth: Polyphony: pb/Jay Lake]
- All-Star Zeppelin Adventure Stories (Wilsonville, Oregon: Wheatland Press/All-Star Stories, 2004) with David Moles [anth: Airships: pb/Lara Wells]
- American Sorrows (Wilsonville, Oregon: Wheatland Press, 2004) [coll: pb/Aynjel Kaye]
- Polyphony 4 (Wilsonville, Oregon: Wheatland Press, 2004) with Deborah Layne [anth: Polyphony: pb/Jay Lake]
- Dogs in the Moonlight (Holicong, Pennsylvania: Wildside Press/Prime Books, 2004) [coll: hb/Juha Lindroos]
- Rocket Science (Auburn, Washington: Fairwood Press, 2005) [pb/Patrick Swenson]
- TEL: Stories (Wilsonville, Oregon: Wheatland Press, 2005) [anth: pb/]
- Polyphony 5 (Wilsonville, Oregon: Wheatland Press, 2005) with Deborah Layne [anth: Polyphony: pb/Alexander Lamb]
- Trial of Flowers: A Novel of the City Imperishable (San Francisco, California: Night Shade Books, 2006) [The City Imperishable: pb/Richard Pellegrino]
- Greetings from Lake Wu (San Pedro, California: Traife Buffet, 2006) [coll: exp of the above: hb/Frank Wu]
- Polyphony 6 (Wilsonville, Oregon: Wheatland Press, 2006) with Deborah Layne [anth: Polyphony: pb/Alexander Lamb]
- Mainspring (New York: Tor, 2007) [Mainspring: hb/Stephan Martinière]
- The River Knows its Own (Wilsonville, Oregon: Wheatland Press, 2007) [coll: pb/Joseph E Lake]
- Escapement (New York: Tor, 2008) [Mainspring: hb/Stephan Martinière]
- Spicy Slipstream Stories (Maple Shade, New Jersey: Lethe Press, 2008) with Nick Mamatas [pb/Toby Johnson]
- The Exquisite Corpuscle (Bonney Lake, Washington: Fairwood Press, 2008) with Frank Wu [anth: pb/Matt Taggart]
- Green (New York: Tor, 2009) [Green: hb/Daniel Dos Santos]
- Death of a Starship (Austin, Texas: Monkey Brain Books, 2009) [novella: pb/Tony Shasteen]
- Madness of Flowers: A Novel of the City Imperishable (San Francisco, California: Night Shade Books, 2009) [The City Imperishable: hb/David Palumbo]
- Other Earths (New York: DAW Books, 2009) with Nick Gevers [anth: pb/]
- Footprints (Overland Park, Kansas: Hadley Rille Books, 2009) with Eric T Reynolds [anth: hb/]
- Pinion (New York: Tor, 2010) [Mainspring: hb/Stephan Martinière]
- The Specific Gravity of Grief (Bonney Lake, Washington: Fairwood Press, 2010) [hb/Patrick Swenson]
- The Baby Killers (Hornsea, East Yorkshire: PS Publishing, 2010) [novella: chap: hb/Daniele Serra]
- The Sky That Wraps: Collected Short Fiction (Burton, Michigan: Subterranean Press, 2010) [coll: hb/Aurélian Police]
- The Starship Mechanic (New York: Tor, 2010) with Ken Scholes [story: ebook: first appeared January 2010 Tor.com: na/Stephan Martinière and Gregory Manchess]
- Endurance (New York: Tor, 2011) [Green: hb/Daniel Dos Santos]
- Two Stories (New York: Tor.com, 2011) with Ken Scholes [coll: ebook: two collaborative stories: na/Gregory Manchess and Stephen Martinière]
- Kalimpura (New York: Tor, 2013) [Green: hb/Daniel Dos Santos]
- Lost in the Time of Metal and Flesh (Rockville, Maryland: Prime Books, 2013) [novella: chap: hb/Sherin Nicole]
- Almost All the Way Home from the Stars (Scotts Valley, California: CreateSpace, 2013) with Ruth Nestvold [coll: pb/Isoga and Alex Mit]
- METAtropolis: The Wings We Dare Aspire (Monument, Colorado: WordFire Press, 2014) with Ken Scholes [anth: METAtropolis: pb/Jess Sturgeon]
- Our Lady of the Islands (Seattle, Washington: Per Aspera Press, 2014) with Shannon Page [Green: hb/Mark J Ferrari]
- Last Plane to Heaven: The Final Collection (New York: Tor, 2014) [coll: hb/Peter Lutjen]